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Citation

If you use LZGraphs in your research, please cite our work.

Citing LZGraphs

BibTeX

@article{lzgraphs2024,
  title={LZGraphs: A Novel Approach for T-Cell Receptor Repertoire Analysis
         Using Lempel-Ziv Compression-Based Graph Representations},
  author={Konstantinovsky, Thomas and others},
  journal={...},
  year={2024},
  doi={...}
}

APA Format

Konstantinovsky, T., et al. (2024). LZGraphs: A Novel Approach for T-Cell Receptor Repertoire Analysis Using Lempel-Ziv Compression-Based Graph Representations. Journal Name.

Chicago Format

Konstantinovsky, Thomas, et al. "LZGraphs: A Novel Approach for T-Cell Receptor Repertoire Analysis Using Lempel-Ziv Compression-Based Graph Representations." Journal Name (2024).

Citing Specific Features

K1000 Diversity Index

If you specifically use the K1000 diversity metric:

@article{lzgraphs2024,
  title={LZGraphs: A Novel Approach for T-Cell Receptor Repertoire Analysis},
  author={Konstantinovsky, Thomas and others},
  note={K1000 diversity metric for repertoire characterization},
  year={2024}
}

LZCentrality

For the LZCentrality sequence centrality measure:

@article{lzgraphs2024,
  title={LZGraphs: A Novel Approach for T-Cell Receptor Repertoire Analysis},
  author={Konstantinovsky, Thomas and others},
  note={LZCentrality for sequence centrality analysis},
  year={2024}
}

Software Citation

For citing the software itself:

@software{lzgraphs_software,
  author = {Konstantinovsky, Thomas},
  title = {LZGraphs: LZ76-Based Graphs for TCR Repertoire Analysis},
  url = {https://github.com/MuteJester/LZGraphs},
  version = {1.1.1},
  year = {2024}
}

Foundational Work

  • Lempel, A., & Ziv, J. (1976). On the complexity of finite sequences. IEEE Transactions on Information Theory.

TCR Repertoire Analysis

  • [Related immunology papers using similar approaches]

Acknowledgments

LZGraphs was developed at [Institution/Lab Name].

Contributors

  • Thomas Konstantinovsky - Lead developer

Funding

[Funding acknowledgments if applicable]

License

LZGraphs is released under the MIT License. See the LICENSE file for details.

Contact

For questions about citing LZGraphs: