PyNCBI

Guides

  • Quickstart
  • Additional workflows
  • Data and output contracts
  • Configuration
  • Migrating to 1.0
  • Release validation and hosting
  • Using PyNCBI from AI agents
  • CLI Reference

API Reference

  • PyNCBI Package Reference
PyNCBI
  • Overview: module code

All modules for which code is available

  • PyNCBI.core.config
  • PyNCBI.core.exceptions
  • PyNCBI.core.formatter
  • PyNCBI.core.logging
  • PyNCBI.core.models
  • PyNCBI.core.reporter
  • PyNCBI.core.tables
  • PyNCBI.core.types
  • PyNCBI.domains.annotation
  • PyNCBI.domains.blast_search
  • PyNCBI.domains.bundle
  • PyNCBI.domains.citations
  • PyNCBI.domains.entrez
  • PyNCBI.domains.expression
  • PyNCBI.domains.genomes
  • PyNCBI.domains.geo.downloads
  • PyNCBI.domains.geo.inspection
  • PyNCBI.domains.geo.matrices
  • PyNCBI.domains.geo.planning
  • PyNCBI.domains.geo.preview
  • PyNCBI.domains.geo.resolve
  • PyNCBI.domains.geo.samples
  • PyNCBI.domains.geo.tables
  • PyNCBI.domains.literature
  • PyNCBI.domains.screening
  • PyNCBI.domains.sequencing
  • PyNCBI.domains.variants
  • PyNCBI.geo.gse
  • PyNCBI.geo.gsm
  • PyNCBI.geo.reader
  • PyNCBI.io.http_client
  • PyNCBI.io.rate_limiter
  • PyNCBI.io.telemetry
  • PyNCBI.metadata.builder
  • PyNCBI.metadata.harmonize
  • PyNCBI.metadata.quality
  • PyNCBI.metadata.schema
  • PyNCBI.metadata.store
  • PyNCBI.metadata.vocabulary
  • PyNCBI.parsing.soft_parser
  • PyNCBI.session

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